R2C2 LAB
Resources, Restoration, Climate, Connectivity
68. Layton K, Brieuc M, Castilho R, Díaz-Arce N, Estévez-Barcia D, Fonseca V, Fuentes-Pardo A, Jeffery N, Jiménez-Mena B, Junge C, Kaufmann J, Leinonen T, Maes S, McGinnity P, Reed T, Reisser C, Silva G, Bradbury I (2024). Global Change Biology. (accepted).
67. Vieira S, Jiménez V, Ferreira-Airaud B, Pina A, Soares V, Tiwari M, Teodósio M A, Castilho R, & Nuno A (2024). Perceived social benefits and drawbacks of sea turtle conservation efforts in a globally important sea turtle rookery. Biodiversity and Conservation.
doi: 10.1007/s10531-024-02793-1
66. Cunha RL, Robalo JI, Francisco SM, Farias I, Castilho R, & Figueiredo I. (2024). Genomics goes deeper in fisheries science: The case of the blackspot seabream (Pagellus bogaraveo) in the northeast Atlantic. Fisheries Research, 270, 106891.
doi: 10.1016/j.fishres.2023.106891
65. Dawson MN, Duf P J, Bosley KL, Castilho R, Ewers-Saucedo C, Gavenus KA, … Wares JP (2023). A decade of death and other dynamics: deepening perspectives on the diversity and distribution of sea stars and wasting. Biol. Bull., 244(3): 1-21.
doi: 10.1086/727969
64. Marques JP, Alves PC, Amorim I, Lopes R, Moura M, Meyers G, … Sousa V (2023). Building a Portuguese Coalition for Biodiversity Genomics (2023). Peer Community in Genomics.
doi: 10.32942/X20W3Q
63. Schiebelhut LM, Giakoumis M, Castilho R, Duffin PJ, Garcia VE, Puritz JB, Wares JP, Wessel GM, Dawson MN (2023). Minor genetic consequences of a major mass mortality: short-term effects in Pisaster ochraceus. The Biological Bulletin 243(3):328-338.
doi: 10.1086/722284
62. Schiebelhut LM, Giakoumis M, Castilho R, Duffin PJ, Garcia VE, Puritz JB, Wares JP, Wessel GM, Dawson MN (2023). It's in the stars: establishing a phylogenetic framework for contrasting species traits. The Biological Bulletin 243(3): 315-327.
doi: 10.1086/722800
61. Cunha RL, Faleh AB, Francisco S, Šanda R, Vukic J, Corona L, Dia M, Glavičić I, Kassar A, Castilho R*, and Robalo JI.* (2022). Wide sampling, three mitochondrial lineages, and no Atlantic-Mediterranean barrier for the bogue Boops boops. Scientific Reports 12: 22124.
(* Contribuição igual dos autores)
doi: 10.1038/s41598-022-26651-8
60. Cunha Rl, Nicastro KR, Zardi GI, Madeira C, McQuaid CD, Cox CJ and Castilho R (accepted). Comparative mitogenomic analyses and gene rearrangements reject the alleged polyphyly of a bivalve genus. PeerJ 10:e13953
doi: 10.7717/peerj.13953
59. Carvalho J, Lammers M, Indeck KL, Pack A and Castilho R (2022). Comparing the social signaling behavior of humpback whales in three group types on the Hawaiian breeding grounds using acoustic tags. Front. Remote Sens. 3:910455.
58. Morrissey D, Goodall, J, Castilho R, Cameron TC and Taylor ML (2022). Population genomics reveals a single semi-continuous population of a commercially exploited marine gastropod. Fisheries Research, 254, 106418.
doi: 10.1016/j.fishres.2022.106418
57. Cunha RL, Costa A, Godinho F, Santos C, Castilho R (2022). Hidden diversity of the olive ridley sea turtle (Lepidochelys olivacea) from Angola, West Africa. Conservation Genetics, 23: 429–433.
doi: 10.1007/s10592-021-01422-6
56. Cunha RL, Sala J, Machado M, Boix D, Madeira C, Madeira PM, Cristo M, Fonseca LC and Castilho R (2021). Distinctive genetic signatures of two fairy shrimp species with overlapping ranges in Iberian temporary ponds. Freshwater Biology, 66, 1680– 1697.
doi: doi.org/10.7717/peerj.11730
55. Francisco SM, Castilho R, Lima CS, Almada F, Rodrigues F, Šanda R, Vukić J, Pappalardo AM, Ferrito V, Robalo JI (2021). Genetic hypervariability across the Pillars of Hercules in a venomous rockfish. PeerJ 9:e11730
doi: doi.org/10.7717/peerj.11730
54. Stacy R, Palma J, Correia M, Wilson, AT, Andrade JP, Castilho R (2021). The paradox of retained genetic diversity of Hippocampus guttulatus in the face of demographic decline. Scientific Reports, 11:10434.
doi: 10.1038/s41598-021-89708-0
53. Robalo JI, Farias I, Francisco SM, Avellaneda K, Castilho R and Figueiredo I (2021). Genetic population structure of the Blackspot seabream (Pagellus bogaraveo): contribution of mtDNA control region to fisheries management. Mitochondrial DNA Part A, 32(4): 115-119.
doi: 10.1080/24701394.2021.1882445
52. Gilbey J, Carvalho G, Castilho R, Coscia I, Coulson MW, Dahle G, Derycke S, Francisco SM, Helyar SJ, Johansen T, Junge C, Layton KKS, Martinsohn J, Matejusova I, Robalo JI, Rodríguez-Ezpeleta N, Silva G, Strammer I, Vasemägi A, Volckaert FAM (2021). Life in a drop: Sampling environmental DNA for marine fishery management and ecosystem monitoring. Marine Policy, 124(10431).
doi: 10.1016/j.marpol.2020.104331
51. Robalo JI, Francisco SM, Vendrell C, Lima CS, Pereira A, Brunner BP, Dia M, Gordo L, Castilho R (2020). Against all odds: a tale of marine range expansion with maintenance of extremely high genetic diversity. Scientific Reports, 10, 12707.
doi: 10.1038/s41598-020-69374-4
50. Cunha RL, Forsman ZH, Beldrock R, Knapp ISS, Castilho R, Toonen RJ (2019). Rare coral under the genomic microscope: timing and relationships among Hawaiian Montipora. BMC Evolutionary Biology, 19 (153).
doi: 10.1186/s12862-019-1476-2
49. Morim T, Bigg GR, Madeira PM, Palma J, Duvernell D, Gisbert E, Cunha RL and Castilho R (2019). Invasive genetics of the mummichog (Fundulus heteroclitus): recent anthropogenic introduction in Iberia. PeerJ.
48. Jenkins TL, Castilho R and Stevens JR (2018). Meta-analysis of northeast Atlantic marine taxa shows contrasting phylogeographic patterns following post-LGM expansions. PeerJ.
47. Coscia I, Castilho R, Massa-Gallucci A, Sacchi C, Cunha RL, Stefanni S, Helyar SJ, Knutsen H, Mariani S (2018). Genetic homogeneity in the deep-sea grenadier Macrourus berglax across the North Atlantic Ocean. Deep-Sea Research Part I:1–0.
doi: 10.1016/j.dsr.2017.12.001
46. Cunha RL, Patrão C and Castilho R (2017). Different diversity-dependent declines in speciation rate unbalances species richness in terrestrial slugs. Scientific Reports, 7: 18198.
doi: 10.1038/s41598-017-16417-y
45. Aurelle D, Pivotto ID, Malfant M, Topçu NE, Masmoudi M, Chaoui L, Kara MH, Coelho M, Castilho R and Haguenauer, A. (2017). Fuzzy species limits in Mediterranean gorgonians (Cnidaria, Octocorallia): inferences on speciation processes. Zoologica Scripta, 46 (6):767-778.
doi: 10.1111/zsc.12245
44. Castilho R, Cunha RL, Faria C, Velasco, EM, Robalo, JI (2017). Asymmetrical dispersal and putative isolation-by-distance of an intertidal blenniid across the Atlantic–Mediterranean divide. PeerJ, 5:e3195–22.
43. Madeira PM, Chefaoui RM, Cunha RL, Moreira F, Dias S, Calado G and Castilho R (2017). High unexpected genetic diversity of a narrow endemic terrestrial mollusc. PeerJ, 5:e3069.
doi: 10.7717/peerj.3069
42. Cunha RL, Assis JM, Madeira C, Seabra R, Lima FP, Lopes EP, Williams ST and Castilho R (2017). Drivers of Cape Verde archipelagic endemism in keyhole limpets. Scientific Reports, 7: 41817.
doi: 10.1038/srep41817
41. Silva G, Cunha, RL, Ramos A and Castilho R (2017). Wandering behaviour prevents inter and intra-oceanic speciation in a coastal pelagic fish. Scientific Reports, 7: 2893.
doi: 10.1038/s41598-017-02945-0.
40. Kramp K, Cizek O, Madeira PM, Ramos AA, Konvicka M, Castilho R and Schmitt T (2016). Genetic implications of phylogeographical patterns in the conservation of the boreal wetland butterfly Colias palaeno (Pieridae). Biological Journal of the Linnaean Society, 119: 1068–1081.
doi: 10.1111/bij.12840
39. Castilho, R and Silva, G (2016). The European anchovy, a genetically highly diverse species displays null within-sample haplotype diversity on a single study? Mitochondrial DNA Part B,1:66–67.
doi: 10.1080/23802359.2015.1137823
38. Stefanni S, Castilho R, Sala-Bozano M, Robalo JI, Francisco S, Santos R, Marques N, Brito, A, Almada V and Mariani S (2015). Establishment of a coastal fish in the Azores: recent colonisation or sudden expansion of an ancient relict population? Heredity, 1–11.
doi: 10.1038/hdy.2015.55
37. Junker M, Zimmermann M, Ramos AA, Gros P, Konvicka M, Nève G, Rákosy L, Tammaru T, Castilho R* and Schmitt T* (2015). Three in one – multiple faunal elements within an endangered European butterfly species. PLoS One, 10 (11), e0142282. (* last joint authors).
doi: 10.1371/journal.pone.0142282
36. Patrão C, Assis J, Rufino M, Silva G, Jordaens K, Backeljau T, Castilho R (2015). Habitat suitability modelling of four terrestrial slug species in the Iberian Peninsula (Gastropoda, Pulmonata: Geomalacus sp.). Journal of Molluscan Studies, 81 (4): 427-434.
35. Zardi GI, Nicastro KR, McQuaid CD, Castilho R, Costa J, Serrão EA, Pearson GA (2015). Intraspecific genetic lineages of a marine mussel show behavioural divergence and spatial segregation over a tropical/subtropical biogeographic transition. BMC Evolutionary Biology, 15 (100).
doi: 10.1186/s12862-015-0366-5
34. Lourenço CR, Nicastro KR, Serrão EA, Castilho R, & Zardi GI (2015). Behind the mask: cryptic genetic diversity of Mytilus galloprovincialis along southern European and northern African shores. Journal of Molluscan Studies, 81 (3):380-387.
33. Silva G, Lima FP, Martel P and Castilho R (2014). Thermal adaptation and clinal mtDNA variation of European anchovy. Proceedings of the Royal Society B - Biological Sciences 281 (1792).
32. Cunha RL, Lima FP, Tenorio MJ, Ramos AA, Castilho R* and Williams ST* (2014). Evolution at a different pace: distinctive phylogenetic patterns of Cone snails from two ancient oceanic archipelagos. Systematic Biology, 63 (6), 971–987. (* last joint authors).
31. Silva G, Horne JB and Castilho R (2014). Anchovies go north and west without losing diversity: post-glacial range expansions in a small pelagic fish. Journal of Biogeography, 41 (6): 1171–1182.
doi: 10.1111/jbi.12275.
30. Patrão C, Teixeira de Sousa J, Jordaens K, Backeljau T, Castilho R and Leitão A (2013). Geomalacus and Letourneuxia (Mollusca, Pulmonata): A cytogenetic assessment. Malacologia, 56 (1-2): 333-338.
doi: 10.4002/040.056.0222.
29. Robalo JI, Crespo AM, Castilho R, Francisco SM, Amorim MC and Almada VC (2013) Are local extinctions and recolonizations continuing at the colder limits of marine fish distributions? Halobatrachus didactylus (Bloch & Schneider, 1801) a possible candidate. Marine Biology, 160: 2461-2467.
doi: 10.1007/s00227-013-2241-5.
28. Prévot V, Jordaens K, Van Houtte N, Sonet G, Janssens K, Castilho R and Backeljau T (2013) Taxonomic and population genetic re-interpretation of two color morphs of the decollate snail, Rumina decollata (Mollusca, Pulmonata) in southern France. Genetica, 141(7-9): 281-292.
doi: 10.1007/s10709-013-9727-4.
27. Cunha, RL, Coscia I, Madeira C, Mariani S, Stefanni S and Castilho R (2012). Ancient divergence in the trans-oceanic deep-sea shark Centroscymnus crepidater. PLoS One, 7(11): e49196.
doi: 10.1371/journal.pone.0049196.
26. Almada VC, Almada F, Francisco SM, Castilho R and Robalo JI (2012) Unexpected high genetic diversity at the extreme Northern geographic limit of Taurulus bubalis (Euphrasen, 1786). PLoS One 7(8): e44404.
doi: 10.1371/journal.pone.0044404.
25. Correia AT, Ramos AA, Barros F, Silva G, Hamer P, Morais P, Cunha RL and Castilho R (2012) Population structure and connectivity of the European conger eel (Conger conger) across the Northeastern-Atlantic and Western-Mediterranean: integrating molecular and otolith elemental approaches. Marine Biology 159 (7): 1509-1525.
doi: 10.1007/s00227-012-1936-3.
24. Robalo JI, Castilho R, Francisco SM, Almada F, Knutsen H, Jorde PE, Pereira AM and Almada VC (2011). Northern refugia and recent expansion in the North Sea: the case of the wrasse Symphodus melops (Linnaeus, 1758). Ecology and Evolution.
doi: 10.1002/ece3.77.
23. Cunha RL, Lopes EP, Reis DM, Castilho R (2011). Genetic structure of Brachidontes puniceus populations in Cape Verde archipelago show signature of expansion during the last glacial maximum. Journal of Molluscan Studies 77: 175-181.
doi: 10.1093/mollus/eyr001.
22. Reis DM, Cunha RL, Patrão C, Rebelo R, Castilho R (2011). Salamandra salamandra (Amphibia: Caudata: Salamandridae) in Portugal: not all black and yellow. Genetica 139:1095-1105.
doi: 10.1007/s10709-011-9609-6.
21. Robalo JI, Sousa-Santos C, Cabral H, Castilho R and Almada VC (2009). Genetic evidence fails to discriminate between Macroramphosus gracilis Lowe, 1839 and M. scolopax Linnaeus, 1758 in Portuguese waters. Marine Biology, 156 (8): 1733-1737.
doi: 10.1007/s00227-009-1197-y.
20. Francisco SM, Castilho R, Soares M, Congiu L, Brito A, Vieira MN and Almada VC (2009). Phylogeography and demographic history of Atherina presbyter (Pisces: Atherinidae) in the North-eastern Atlantic based on mitochondrial DNA. Marine Biology, 156 (7): 1421-1432.
doi: 10.1007/s00227-009-1182-5.
19. Ramos AA, Marques AR, Rodrigues M, Henriques N, Baumgartner A, Castilho R, Brenig B and Varela JC (2009). Molecular and functional characterization of a cDNA encoding 4-hydroxy-3-methylbut-2-enyl diphosphate reductase from Dunaliella salina. Journal of Plant Physiology, 166: 968-977.
doi: 10.1016/j.jplph.2008.11.008.
18. Maggs CA, Castilho R, Foltz D, Henzler C, Jolly T, Kelly J, Olsen J, Perez KE, Stam W, Vainola R, Viard F and Wares J (2008). Evaluating signatures of glacial refugia for North Atlantic marine organisms. Ecology, 89 (11): S108-S122.
doi:10.1890/08-0257.1.
17. Barata M, Harris DJ and Castilho, R (2008). Variation within North African Natrix maura (Serpentes: Colubridae) inferred from mtDNA sequences: comparative phylogeography of Magrehbian reptiles. African Zoology, 43 (1): 1-7.
doi: 10.1080/15627020.2008.11407400.
16. Cunha RL, Tenório MJ, Afonso C, Castilho R and Zardoya R (2008). Replaying the tape: recurring biogeographical patterns in Cape Verde Conus after 12 million years. Molecular Ecology, 17 (3): 885-901.
doi: 10.1111/j.1365-294X.2007.03618.x.
15. Francisco SM, Congiu L, Stefanni S, Castilho R, Brito A, Ivanova PP, Levy A, Cabral A, Kilias G, Doadrio I and Almada VC (2008). Phylogenetic relationships of the North-eastern Atlantic and Mediterranean forms of Atherina (Pisces, Atherinidae). Molecular Phylogenetics and Evolution, 48 (2):782-788.
doi: 10.1016/j.ympev.2007.12.009.
14. Patarnello T, Volckaert F and Castilho R (2007). Pillars of Hercules: Is the Atlantic-Mediterranean transition a phylogeographic break? Molecular Ecology, 16 (21): 4426-4444. Invited review.
doi: 10.1111/j.1365-294X.2007.03477.x.
13. Castilho R, Freitas M, Silva G, Fernandez-Carvalho J and Coelho R (2007). Morphological and mitochondrial DNA divergence validates blackmouth, Galeus melastomus, and Atlantic sawtail catsharks, Galeus atlanticus, as separate species. Journal of Fish Biology, 70, Suppl.C: 346-358.
doi: 10.1111/j.1095-8649.2007.01455.x.
12. Magoulas A, Castilho R, Caetano S, Marcato S and Patarnello T (2006). Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus). Molecular Phylogenetics and Evolution, 3: 734-746.
doi: 10.1016/j.ympev.2006.01.016.
11. Martinez P, Gonzalez, EG, Castilho R and Zardoya R (2006). Genetic diversity and historical demography of Atlantic bigeye tuna (Thunnus obesus). Molecular Phylogenetics and Evolution, 2: 404-416.
doi: 10.1016/j.ympev.2005.07.022.
10. Fritz U, Barata M, Busack SD, Fritzsch G and Castilho R (2006). Impact of mountain chains, sea straits and peripheral populations on genetic and taxonomic structure of a freshwater turtle, Mauremys leprosa (Reptilia, Testudines, Geoemydidae). Zoologica Scripta, 35 (1): 97-108.
doi: 10.1111/j.1463-6409.2005.00218.x.
9. Castilho R and Cyfti Y (2005). Genetic differentiation between close Eastern sea bass (Dicentrarchus labrax L.) populations. Journal of Fish Biology, 67: 1746-1752.
doi: 10.1111/j.1095-8649.2005.00869.x.
8. Cunha RL, Castilho R, Rüber R and Zardoya R (2005). Patterns of cladogenesis in the venomous marine gastropod genus Conus from the Cape Verde Islands. Systematic Biology, 54(4):634–650.
doi: 10.1080/106351591007471.
7. Zardoya R, Castilho R, Grande C, Favre-Krey L, Caetano S, Marcato S, Krey G and Patarnello T (2004). Differential population structuring of two closely related fish species, the mackerel (Scomber scombrus) and the chub mackerel (Scomber japonicus) in the Mediterranean. Molecular Ecology,13: 1785-1798.
doi: 10.1111/j.1365-294X.2004.02198.x.
6. Geenen S, Jordaens K, Castilho R and Backeljau T (2003). Congruence between starch gel and polyacrylamide gel electrophoresis in detecting allozyme variation in pulmonate land slugs. Electrophoresis, 24: 622-627.
doi: 10.1002/elps.200390072.
5. Ciftci Y, Castilho R and McAndrew BJ (2002). More polymorphic microsatellite markers in the European sea bass (Dicentrarchus labrax L.). Molecular Ecology Notes, 2 (4): 575-576.
doi: 10.1046/j.1471-8286.2002.00327.x.
4. Phillips A, Fonseca F, Povoa V, Castilho R and Nolasco G (2002). A reassessment of the anamorphic fungus Fusicoccum luteum and description of its teleomorph Botryosphaeria lutea sp. nov. Sydowia, 54 (1): 59-77.
doi: Não disponível. Link.
3. Castilho R and McAndrew BJ (1998). Population structure of seabass (Dicentrarchus labrax L.) in Portugal: evidence from allozymes. Journal of Fish Biology, 53(5):1038-1049.
doi: 10.1111/j.1095-8649.1998.tb00461.x.
2. Castilho R and McAndrew BJ (1998). Two polymorphic microsatellite markers in the European seabass Dicentrarchus labrax (L.). Animal Genetics, 29:151-152.
doi: 10.1046/j.1365-2052.1998.00216.x.
1. Castilho R, Dinis MT and Erzini K (1993). Age and growth of megrim, Lepidorhombus boscii, Risso of the Portuguese continental coast. Fisheries Research, 16: 339-346.
doi: 10.1016/0165-7836(93)90145-W.
