#mega !Title untrimmed; !Format DataType=DNA indel=- CodeTable=Standard; !Domain=Data property=Coding CodonStart=1; #AB188524_Phoca_largha_RAG1 "Phoca largha RAG1 gene, partial cds, isolate: NG02-02." CATGAGAGCCCGAGACCTTGATGACTACCTGAATGGCCCCTTCACTGTCGTGGTGAAGGA GTCTTGTGACGGAATGGGAGATGTGAGCGAGAAGCACGGGAGTGGGCCAGCAGTTCCAGA AAAGGCAGTTCGGTTTTCGTTCACGGTCATGAAAATTACTGTAGCCCATGGCTCAGAAAA CGTGAAGGTGTTTGAAGAAGTCAAACCCAACTCCGAACTGTGTTGTAAGCCCCTGTGTCT CATGCTGGCAGATGAGTCTGACCACGAGACCCTGACGGCCATCCTGAGCCCTCTCATTGC CGAGAGGGAGGCCATGAAGAGCAGCCAATTAATGCTTGAGATGGGAGGCATCCTTCGGAC TTTCAAGTTCATCTTCAGGGGCACTGGATATGATGAGAAACTCGTCCGGGAAGTCGAAGG CCTTGAGGCTTCTGGCTCAGTCTACATTTGTACCCTTTGTGACGCCACCCGCCTGGAAGC CTCTCAGAATCTTGTCTTCCACTCCATCACCAGAAGCCACTCTGAGAACCTGGAGCGCTA TGAGGTCTGGCGTTCCAACCCATACCACGAGTCGGTGGAAGAACTGCGGGATCGGGTGAA AGGGGTCTCATCGAAACCTTTCATCGAGACTGTCCCTTCCATAGATGCACTCCACTGTGA CATTGGCAATGCGGCTGAGTTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAA GAATCCCAATGCTTCCAAAGAGGAAAGGAAAAGATGGCAGGCTACATTGGACAAGCATCT CCGGAAGAAGATGAACCTGAAACCCATCATGAGGATGAATGGCAACTTTGCCAGGAAGCT CATGACCAAAGAGACAGTTGAAGCAGTTTGTGAATTAATTCCCTCTGAGGAGAGGCACGA AGCTCTGAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCTGTATGGCGATCATCGTG TCCTGCAAAAGAGTGCCCAGAATCCCTCTGCCAGTATAGCTTCAATTCACAGCGTTTTGC TGAGCTCCTCTCTACCAAGTTCAAGTATAGATATGAGGGCAAAATCACCAATTATTTTCA CAAAACCCTGGCACA---- #AB188523_Phoca_vitulina_RAG1 "Phoca vitulina RAG1 gene, partial cds, isolate: NZ02-43." CATGAGAGCCCGAGACCTTGATGACTACCTGAATGGCCCCTTCACTGTCGTGGTGAAGGA GTCTTGTGACGGAATGGGAGATGTGAGCGAGAAGCACGGGAGTGGGCCAGCAGTTCCAGA AAAGGCAGTTCGGTTTTCGTTCACGGTCATGAAAATTACTGTAGCCCATGGCTCAGAAAA CGTGAAGGTGTTTGAAGAAGTCAAACCCAACTCCGAACTGTGTTGTAAGCCCCTGTGTCT CATGCTGGCAGATGAGTCTGACCACGAGACCCTGACGGCCATCCTGAGCCCTCTCATTGC CGAGAGGGAGGCCATGAAGAGCAGCCAATTAATGCTTGAGATGGGAGGCATCCTTCGGAC TTTCAAGTTCATCTTCAGGGGCACTGGATATGATGAGAAACTCGTCCGGGAAGTCGAAGG CCTTGAGGCTTCTGGCTCAGTCTACATTTGTACCCTTTGTGACGCCACCCGCCTGGAAGC CTCTCAGAATCTTGTCTTCCACTCCATCACCAGAAGCCACTCTGAGAACCTGGAGCGCTA TGAGGTCTGGCGTTCCAACCCATACCACGAGTCGGTGGAAGAACTGCGGGATCGGGTGAA AGGGGTCTCATCGAAACCTTTCATCGAGACTGTCCCTTCCATAGATGCACTCCACTGTGA CATTGGCAATGCGGCTGAGTTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAA GAATCCCAATGCTTCCAAAGAGGAAAGGAAAAGATGGCAGGCTACATTGGACAAGCATCT CCGGAAGAAGATGAACCTGAAACCCATCATGAGGATGAATGGCAACTTTGCCAGGAAGCT CATGACCAAAGAGACAGTTGAAGCAGTTTGTGAATTAATTCCCTCTGAGGAGAGGCACGA AGCTCTGAGGGAGCTGATGGACCTTTACCTGAAGATGAAGCCTGTATGGCGATCATCGTG TCCTGCAAAAGAGTGCCCAGAATCCCTCTGCCAGTATAGCTTCAATTCACAGCGTTTTGC TGAGCTCCTCTCTACCAAGTTCAAGTATAGATATGAGGGCAAAATCACCAATTATTTTCA CAAAACCCTGGCACA---- #AB253976_Glaucomys_volans_RAG1 "Glaucomys volans RAG1 gene, partial cds." CATGAGGTCCCAAGACCTTGATGACTACCTGAATGGTCCCTTCACCGTAGTGGTGAAGGA ATCTTGTGATGGAATGGGAGACGTGAGCGAGAAGCATGGGAGTGGGCCTGCGGTTCCAGA AAAGGCAGTTCGTTTTTCATTCACAATCATGAAAATTACCATAGCTCATGGCTCACAGAA TGTGAAGGTGTTTGAGGAGGCCAAACCTAACTCTGAACTGTGTTGCAAGCCCTTGTGCCT TATGCTGGCAGATGAGTCTGACCACGAGACCCTGACTGCCATCCTGAGCCCCCTCATTGC TGAGAGGGAGGCTATGAAGAGCAGTGAACTAATGCTGGAGATGGGAGGCATCCTCAGGAC CTTCAAGTTCATCTTCAGGGGAACTGGATATGATGAAAAACTTGTCCGGGAAGTGGAAGG CCTCGAGGCGTCTGGCTCCGTCTATATTTGTACGCTTTGTGATGCCACCCGCCTGGAAGC CTCTCAAAACCTTGTCTTCCACTCCATAACCAGAAGCCATGCTGAGAATCTGGAGCGCTA CGAGGTCTGGCGCTCTAACCCRTACCACGAGTCTGTGGAAGAACTGCGGGATCGGGTGAA AGGGGTCTCTTCYAAACCTTTTATTGAGACAGTCCCTTCCATAGATGCACTCCACTGCGA CATTGGCAATGCCGCGGAGTTCTACAAGATTTTCCAGCTAGAGATAGGAGAAGTATATAA AAATCCCAATGCCTCCAAAGAGGAAAGGAAAAGATGGCAGGCCACACTGGACAAGCATCT CCGGAAGAAGATGAACCTAAAACCAATCATGAGGATGAATGGCAACTTTGCCAGGAAGCT CATGACAAAGGAGACTGTTGAGGCGGTGTGCGAATTAATTCCTTCTGAAGAGAGGCATGA AGCTCTCAGGGAGCTAATGGACCTTTACCTGAAGATGAAACCCGTGTGGCGCTCCTCATG CCCTGCCAAAGAGTGCCCAGAGTCCCTCTGCCAGTATAGTTTCAACTCACAGCGTTTTGC TGAGCTCCTTTCTACCAAGTTCAAGTACAGATACGAGGGCAAAATCACCAACTATTTTCA CAAAACCTTGGCGCATGTG #AB109361_Ursus_arctos_RAG1 "Ursus arctos RAG1 gene, partial cds, isolate: HS1420." CATGACAGCCCAAGACCTTGATGACTACCTGAATGGCCCCTTTACCGTCGTGGTGAAGGA GTCTTGCGACGGAATGGGAGATGTGAGCGAGAAGCACGGGAGCGGGCCCGCAGTTCCAGA AAAGGCAGTTCGGTTTTCATTCACGGTCATGAAAATTACCATAGCACGTGGCTCAGAAAA TGTGAAGGTGTTCGAAGAAGTCAAACCTAACTCTGAACTGTGTTGTAAGCCTCTGTGTCT CATGCTGGCAGATGAGTCTGACCATGAGACCCTGACGGCCATCCTGAGCCCTCTCATTGC TGAGAGGGAGGCCATGAAGAGCAGCCAATTAATGCTTGAGATGGGAGGCATCCTTCGGAC TTTCAAGTTCATCTTCAGGGGCACCGGCTATGATGAGAAACTCGTCCGGGAAGTCGAAGG CCTCGAGGCTTCTGGCTCAGTATACATTTGTACCCTTTGTGATGCCACCCGCTTGGAAGC CTCTCAAAATCTTGTCTTCCACTCCATCACCAGAAGCCACTCTGAGAACCTGGAGCGCTA TGAGGTCTGGCGTTCCAACCCGTACCACGAGTCTGTGGACGAACTGCGGGATCGGGTGAA GGGGGTCTCATCGAAACCTTTCATCGAGACAGTCCCTTCCATAGATGCACTCCACTGCGA CATTGGCAATGCGGCCGAGTTCTACAAGATTTTCCAGCTAGAGATAGGGGAGGTGTATAA GAATCCCAATGCCTCCAAAGAGGAAAAGAAAAGATGGCAGGCTACGTTGGACAAGCATCT CAGGAAGAAGATGAACCTCAAGCCGATCATGAGGATGAATGGCAACTTTGCCAGGAAGCT CATGACCAAAGAGACGGTTGAAGCAGTGTGTGAATTAATTCCCTCTGAGGAGAGGCACGA GGCTCTGAGAGAGCTGATGGACCTTTACCTGAAGATGAAGCCTGTATGGCGATCGTCGTG TCCTGCGAAAGAGTGCCCAGAATCCCTCTGCCAGTATAGCTTCAATTCACAGCGTTTTGC TGAGCTCCTCTCTACCAAGTTCAAGTATAGATACGAGGGCAAAATCACCAATTATTTTCA CAAAACCCTGGCACA---- #AY011900_Macaca_mulatta_RAG1 "Macaca mulatta recombination activating protein 1 (RAG1) gene, partial cds." -------------------------------AATGGCCCCTTCACAGTGGTGGTGAAGGA GTCTTGTGATGGAATGGGAGATGTGAGTGAGAAGCACGGGAGTGGGCCAGTAGTTCCAGA AAAGGCAGTCCGTTTTTCATTCACAATCATGAAAATTACTATCGCCCACAGCTCTCAGAA TGTGAAAGTATTTGAGGAAGCCAAACCTAACTCTGAACTGTGTTGCAAGCCATTGTGCCT TATGCTGGCAGATGAGTCTGACCACGAGACACTGACTGCCATCCTGAGCCCTCTCATTGC TGAGAGGGAGGCCATGAAGAGCAGTGAATTAATGCTTGAGCTGGGAGGCATTCTACGGAC TTTCAAGTTTATCTTCAGGGGTACCGGATATGATGAAAAACTTGTGCGGGAAGTGGAAGG CCTTGAGGCTTCTGGCTCAGTCTACATTTGTACTCTTTGTGATGCCACCCGTCTGGAAGC CTCTCAAAATCTTGTCTTCCACTCTATAACCAGAAGCCATGCTGAGAACCTGGAACGTTA TGAGGTCTGGCGTTCCAATCCTTACCATGAGTCTGTGGAAGAACTGCGGGATCGGGTGAA AGGGGTCTCAGCCAAACCTTTCATTGAGACAGTCCCTTCCATAGATGCACTCCACTGTGA CATTGGCAATGCAGCTGAGTTCTACAAGATCTTCCAGCTAGAGATAGGGGAGGTGTATAA GAATCCCAATGCTTCCAAAGAGGAAAGGAAAAGGTGGCAGGCCACACTGGACAAGCATCT CCGGAAGAAGATGA?C-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------- #AF447522_Megaptera_novaeangliae_Rag1 "Megaptera novaeangliae recombination activating protein 1 (Rag1) gene, partial cds." -------------------------------------------ACTGTAGTGGTGAAGGA GTCTTGTGATGGGATGGGAGATGTGGGCGAGAAGCACGGCAGTGGGCCAGCAGTTCCGGA AAAGGCAGTTCGGTTTTCCTTCACGATCATGAAAATCACCATCGCTCACGGGTCACAGAA TGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCTGAACTGTGTTGCAAGCCCTTGTGCCT CATGCTGGCAGATGAGTCTGACCACGAGACCCTGACGGCCATCCTGAGCCCTCTCATTGC CGAGAGGGAGGCCATGAAGAGCAGCAAATTAATGCTTGAGATGGGAGGCATCTTCCGGAC TTTCAAGTTCATCTTTAGGGGCACTGGGTATGATGAGAAACTTGTCCGGGAAGTGGAAGG CCTCGAGGCTTCGGGCTCAGTCTACATTTGTACCCTTTGTGATGCCACCCGCCTGGAAGC CTCTCAAAATCTTGTCTTCCACTCCATCACCAGAAGCCACGTTGATAATCTGGAGCGCTA TGAGGTCTGGCGTTCCAACCCATACCATGAGACGGTGGAGGAACTGCGGGACCGGGTGAA GGGGGTCTCGGCCAAACCCTTCATTGAGACGGTCCCTTCCATAGATGCACTCCACTGCGA CATCGGCAACGCAGCTGAGTTCTACAAGATTTTCCAGCTGGAGATAGGGGAGGTGTATAA GAACCCCAGTGCCTCCAAAGAGGAGAGGAAAAGATGGCAGGCTGCCTTGGACAAGCACCT CCGGAAGAAGATGAATCTGAAACCAATCATGAGGATGAATGGCAACTTTGCCAGGAAGCT CATGACCAAAGAGACGGTTGAAGCAGTTTGTGAATTAATTCCCTCCGAGGAGAGGCACGA AGCCCTGAGGGAACTAATGGACCTTTATTTGAAGATGAAACCCGTCTGGCGATCATCATG CCCTGCTAAGGAGTGTCCAGAATCCCTCTGCCAGTATAGTTTCAATTCACAGCGTTTTGC TGAGCTCCTCTCCACCAAGTTCAAGTATAGATACGAGGGCAAAATCACCAATTATTTTCA CAAAAC------------- #AY059704_Tursiops_truncatus_RAG1 "Tursiops truncatus RAG1 gene, partial cds." ----------------------GACTACCTGAATGGCCCCTTCACCGTAGTGGTGAAGGA GTCTTGTGATGGGATGGGAGACGTGGGTGAGAAGCATGGCAGTGGGCCAGCAGTTCCGGA GAAGGCAGTTCGGTTTTCCTTYACGATCATGAAAATCACCATCGCTCACGGGTCACAGAA TGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCTGAACTGTGTTGCAAGCCCTTGTGCCT CATGCTGGCAGATGAGTCTGACCACGAGACCCTGACGGCCATCCTGAGCCCTCTCATTGC CGAGAGGGAGGCCATGAAGAGCAGCAGATTAATGCTTGAGATGGGAGGCATCCTCCGGAC TTTCAAGTTCATCTTTAGGGGCACCGGGTATGATGAGAAACTTGTCCGGGAAGTGGAAGG ACTCGAGGCTTCCGGCTCAGTCTACATTTGTACCCTTTGTGATGCCACCCGCCTGGAAGC CTCTCAAAATCTTGTCTTCCACTCCATCACCAGAAGCCACGTTGATAATCTGGAACGCTA TGAGGTCTGGCGTTCCAACCCATACCATGAGACGGTGGAGGAACTGCGGGACCGGGTGAA GGGGGTCTCGGCCAAACCCTTCATTGAGACGGTCCCTTCCATAGATGCACTCCACTGYGA CATCGGCAACGCAGCTGAGTTCTACAAGATTTTCCAGCTGGAGATAGGGGAGGTGTATAA GAACCCCAGTGCCTCCAAAGAGGAGAGGAAAAGATGGCAGGCTGCCTTGGACAAGCACCT CCGGAAGAAGATGAAT-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------- #AY011909_Hippopotamus_amphibius_RAG1 "Hippopotamus amphibius recombination activating protein 1 (RAG1) gene, partial cds." ----------------------GACTACATGAACGGCCCCTTCACCGTAGTGGTGAAGGA GTCTTGTGATGGGATGGGAGACGTGAGCGAGAAGCACGGCAGTGGGCCGGTGGTTCCGGA AAAGGCAGTCCGGTTTTCCTTCACGATCATGAAAATCACCCTCGCTCACGGGTCACAGAA CGTGAAGGTGTTTGAGGAGGCCA?GCCGAACTCGGAACTGTGTTGCAAGCCCTTGTGCCT TATGCTGGCGGATGAGTCTGACCACGAGACCCTGACGGCCATTCTGGGCCCTCTCATTGC AGAGAGGGAGGCCATGAAGAGCAGCGAATTGATGCTTGAGATGGGAGGCATCCTCCGGAC TTTCAAGTTCATCTTTAGGGGCACTGGATATGATGAGAAACTTGTCCGGGAAGTGGAAGG CCTCGAGGCTTCTGGCTCAGTCTACATTTGTACGCTTTGTGATGCCACCCGCCTGGAAGC CTCTCAGAATCTTGTCTTCCACTCCATCACCAGAAGCCACGCTGAGAATCTGGAGCGCTA TGAGGTCTGGCGTTCCAACCCGTACCACGAGACGGTGGAGGAACTGCGGGACCGCGTGAA GGGGGTCTCGGCCAAACCCTTCATTGAGACAGTGCCTTCCATAGATGCGCTCCACTGCGA CATCGGCAACGCGGCTGAGTTCTATAAGATTTTCCAGCTGGAGATAGGGGAGGTGTATAA GAACCCCAGCGCCTCCAAAGAGGAGAGGAAAAGATGGCAGGCTACCTTGGACAAGCACCT CCGGAAGAAGATGAAT-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------- #AY059705_Sus_scrofa_RAG1 "Sus scrofa RAG1 gene, partial cds." ----------------------GACTACCTGAATGGCCCCTTCACTGTGGTGGTGAAGGA GTCTTGTGATGGGATGGGAGACGTGAGTGAGAAGCACGGCAGTGGGCCGGTCGTGCCGGA AAAGGCCGTTCGGTTTTCCTTCACAGTCATGAAAATCACCATCGCACACGGGTCACAGAA CGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCTGAACTATGCTGCAAGCCCTTGTGCCT CATGCTGGCCGACGAATCCGACCATGAGACCCTGACGGCCATCCTGAGCCCTCTCATTGC CGAGAGGGAGGCCATGAAGAGCAGCCAGCTAATGCTGGAGATGGGAGGCATCCTCCGGAC TTTCAAGTTCATCTTCAGGGGCACCGGATATGATGAGAAACTGGTCCGGGAAGTGGAAGG TCTTGAGGCTTCTGGCTCTGTCTACATCTGTACCCTCTGTGATGCCACCCGCCTGGAAGC CTCTCAAAATCTGGTCTTCCACTCCATAACCAGAAGCCACGCGGAGAATTTGGAGCGCTA TGAGGTCTGGCGTTCCAACCCATACCATGAGACGGTGGATGAACTTCGGGACCGGGTGAA AGGGGTCTCGGCCAAACCCTTCATTGAGACGGTGCCTTCCATAGATGCCCTCCACTGTGA CATTGGCAATGCAGCCGAGTTCTACAAGATTTTCCAGCTCGAGATAGGGGAGGCGTATAA GAACCCCCATGCCTCCAAGGAGGAAAGGAAGAGATGGCAGGCGACCTTGGACAAGCACCT CCGCAAGAAGATGAAC-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------- #AY011912_Equus_caballus_RAG1 "Equus caballus recombination activating protein 1 (RAG1) gene, partial cds." ----------------------GATTACCTGAACGGCCCCTTCACTGTGGTGGTGAAGGA GTCCTGTGACGGGATGGGAGACGTGAGTGAGAAGCACGGCAGTGGGCCAGCCGTTCCGGA AAAGGCAGTTCGGTTTTCATTCACAATCATGAAAATTACTATAGCACATGGCTCACAGAA TGTGAAGGTGTTTGAGGAAGCCAAACCTAACTCTGAGCTGTGTTGCAAGCCCTTGTGCCT TATGCTGGCAGATGAATCTGACCACGAGACTCTGACGGCCATCCTGAGCCCTCTCATTGC TGAGCGGGAGGCCATGAAGGACAGCGAATTAATGCTTGAGATGGGAGGCATCCTCCGCAC TTTCCAGTTCATCTTTCGGGGCACGGGCTATGATGAGAAACTTGTCCGGGAAGTGGAAGG CCTTGAGGCTTCCGGCTCGGTCTACATCTGTACCCTTTGTGATGCCACCCGCCTGGAAGC CTCTCAAAATCTTGTCTTCCACTCCATAACCAGAAGCCACGCTGAGAACCTGGAGCGCTA TGAGGTCTGGCGTTCCAACCCATACCATGAGTCTGTGGAAGAATTGCGGGATCGGGTGAA AGGGGTCTCCGCCAAGCCCTTCATCGAGACAGTCCCTTCCATAGATGCGCTCCACTGCGA CATTGGCAATGCAGCTGAGTTCTACAAGATCTTCCAGCTAGAGATTGGGGAGGTGTATAA GAACCCCAATGCCTCCAAAGAGGAAAGGAAAAGATGGCAGGCTACGCTGGACAAACATCT CCGGAAGAAGATGAAC-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------